Updated score service to use R 4.4.0

To address R vulnerability CVE-2024-27322

docker-compose.yml

 version: '3'
 services:
 
-  app:
-    build: ./decideapp
-    image: decideapp
-    container_name: decideapp
-    ports: 
-      - "80:80"
+  # app:
+  #   build: ./decideapp
+  #   image: decideapp
+  #   container_name: decideapp
+  #   ports: 
+  #     - "80:80"
   
   # nlg:
   #   build: ./nlg

score/dockerfile

-FROM r-base:4.3.1
+FROM r-base:4.4.0
 
 RUN apt-get update -qq
 
-# Install the linux libraries needed for plumber
-RUN apt-get install -y \
-  libssl-dev \
-  libcurl4-gnutls-dev \
-  libsodium-dev
+# # Install the linux libraries needed for plumber
+# RUN apt-get install -y \
+#   libssl-dev \
+#   libcurl4-gnutls-dev \
+#   libsodium-dev
+
+# # Install the ubuntu libraries needed for R spatial stuff
+# RUN apt-get install -y \
+#   libgdal-dev \
+#   libproj-dev \
+#   libgeos-dev \
+#   libudunits2-dev \
+#   libv8-dev libnode-dev \
+#   libcairo2-dev \
+#   libnetcdf-dev 
 
-# Install the ubuntu libraries needed for R spatial stuff
-RUN apt-get install -y \
+# # Other libraries needed for tidyverse
+# RUN apt-get install -y \
+#   libharfbuzz-dev \
+#   libfribidi-dev 
+
+# Install the ubuntu libraries needed for R packages.
+# Use packagemanager to get system dependencies, e.g:
+# https://packagemanager.rstudio.com/__api__/repos/1/sysreqs?all=false&pkgname=sf&distribution=ubuntu&release=22.04
+RUN apt-get update -qq && apt-get install -y \
+  libcurl4-openssl-dev \
+  libssl-dev \
+  make \
+  zlib1g-dev \
+  libsodium-dev \
+  libicu-dev \
   libgdal-dev \
-  libproj-dev \
+  gdal-bin \
   libgeos-dev \
+  libproj-dev \
+  libsqlite3-dev \
   libudunits2-dev \
-  libv8-dev libnode-dev \
-  libcairo2-dev \
-  libnetcdf-dev 
-
-# Other libraries needed for tidyverse
-RUN apt-get install -y \
+  libpng-dev \
+  pandoc \
+  libfreetype6-dev \
+  libjpeg-dev \
+  libtiff-dev \
+  libfontconfig1-dev \
+  libfreetype6-dev \
+  libfribidi-dev \
   libharfbuzz-dev \
-  libfribidi-dev 
+  libxml2-dev
 
 # Install libraries
 # RUN R -e "options(repos = list(CRAN = 'http://mran.revolutionanalytics.com/snapshot/2021-09-28/'))"